rs29839922 SNP Detail

Summary

• ID
  rs29839922
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30065262 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACAACAAAA ACTAATGACT
  TAAATAACCC TTGAACTCTG TTCCTGCTAT ACTATACTGC CTGGAAGTTA ACATGAAACC
  CTTGGCTATA TGGCCCGAAA GCAGTTTTAC ATAGAACTCC AATAACCATC CACTTGCAGA
  TTCAAGTCAT TAACTCACCA TAAACTTCAA GAACTCGGTT CTGAGCGTTC CAGGCTAAAG
  Y
  ACTATGAATA AGTCCTTGAC CATGAGGCCC TCAAAGGGCA GTAAGTCGTT GCAGGACTTT
  AAAAAGAAAA ACAATAACGG AAGAGAAAGA CAATAATTGC TCCCTCCCCC TCCTTCCATC
  TCTCCACACT AACAGAGAGT TAAATACCCT TTCTATGGAA GACACATTTT AACAAATACG
  TTACTTATAA AATTCCAGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46886392	NES10819344	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29839922					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46886392	NES10819344	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30065262 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13032	CpG island 13032			1143 bp proximal
Mecom	MDS1 and EVI1 complex locus			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr574700	regulatory region 574700			225 bp distal
Rr574701	regulatory region 574701			776 bp proximal
Rr574702	regulatory region 574702			1277 bp proximal
Tssr28678	transcription start site region 28678			1085 bp upstream
Tssr32873	transcription start site region 32873			1773 bp downstream
Tssr32874	transcription start site region 32874			1891 bp downstream
Tssr32875	transcription start site region 32875			1912 bp downstream