rs29839680 SNP Detail

Summary

• ID
  rs29839680
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:32877963 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAAAAGAT AAGGCGTGGA
  ATGATTAAGG AAGACAGCTA ACCTTTGACC TCCCCTTGGT CTTTCAGAAG CTCCTTAACC
  AATGACCTTG TTCTCCCTCC AGTCTGCACA CGCTCCTCTG GAACCATTCT CGATGCCCAG
  AACTGCACAG GGCTGCTGGT CAGATGACTC TGCCTCGTCG CCTCAGTTTA CCTGGCTGAC
  Y
  CATCTTTCTT GTGTTAGCTC TCAGGTGCCC TCCAGAGTTA GGAGTTCCAT ACCTCACCTC
  TGCCTGTGTT TTGGCTGTTT CAGCCAGAAT ACCTTCTCTG TCACCTCTCC CCTGGGTGAC
  CCAGACATGC TTCAAAGCTG GCCCGGTGTT AACTGTGAGG ACCCCTCTCC CCAACCTGGG
  CTAGGCTCTC CCTTTCTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss46888060	NES10812292	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs29839680					SNP	C	C	C	C	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46888060	NES10812292	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32877963 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr575028	regulatory region 575028			601 bp distal
Rr575029	regulatory region 575029			1206 bp proximal
Usp13	ubiquitin specific peptidase 13 (isopeptidase T-3)			Intron
				Noncoding-Transcript-Variant