rs29839269 SNP Detail

Summary

• ID
  rs29839269
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30073890 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTCCTCTT GTGTACCTTT
  GGGTAAGTCA CTTAACCTTT GAGTTGATTT CCATGCAAGT TTCATAATAT CAGCATAATG
  AGAGTGTTGG GAAAATCCAT TGGGTAATGT AAGCGTGAGG TGCTCTGACT CCGTGGGAAC
  AGGTCAAAAT AAGTAAGTTG CAATGTGTCT GTATACCAGA CTCAAGTAAA CACCCACGTA
  W
  GCACAACACG GAAGCTAGTC CCGCCTGCAA GTGTGACTGT ACTTTTTTAA TCCTTTGTTC
  TGCTCCAACG TCAGTTGCCC TAATTCTTAT CTTGACTTTG GGAGAGGAGA ATTTTAACAA
  TTCGTTTGGG TTTTTTTTGT TTCTCTCTCT CCTCGCTCTC TTGCTCTCTC TCTCTTTCTC
  TCTCTTTCAC TCTCTCTCTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46886482	NES10818894	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29839269					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46886482	NES10818894	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30073890 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mecom	MDS1 and EVI1 complex locus			Intron
				Noncoding-Transcript-Variant
Mecomos	MDS1 and EVI1 complex locus, opposite strand			199 bp upstream
Rr574707	regulatory region 574707			1109 bp distal
Rr574708	regulatory region 574708			within coordinates
Rr574709	regulatory region 574709			309 bp proximal