rs29839133 SNP Detail

Summary

• ID
  rs29839133
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:32880917 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGACATAG CAGATGAGGG
  CACAAAGACC GAGGGGATTG ACAACCCTTC AGGTAGTTCA GTGGCATCTT CCATGCAGCT
  CAGTCCATGG GGTCTTGGAA ACTGGCTGAA TAGAACAAGT TCAGCCAGGA GTGGCCACTT
  TTGAGAAGGG CACACCTTTC TTCTCTCTAC AGGAAAGCCT GACAGAATGC CTGGCACAGG
  Y
  ACCTCTCTGG AATCCGGTGG CTGTCCCTGT CCTGCCCCCT GCCTTGAATG CAACAGCCCG
  GAAGGAAAAG CTGCTCTTTT TTTTTCAAGC CCTGGCAGCG ACGGCTATGC TTGCCAACAG
  CCGCCCACCC AGCTCCTGCC AGCAAAATGA CATCTGCTTC GCAGACACAC TAGGCAGCCT
  TGGGGATCAG GCTAGCCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46888153	NES10812138	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29839133					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46888153	NES10812138	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32880917 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr575029	regulatory region 575029			1525 bp distal
Rr575030	regulatory region 575030			within coordinates
Usp13	ubiquitin specific peptidase 13 (isopeptidase T-3)			Intron
				Noncoding-Transcript-Variant