rs29839082 SNP Detail

Summary

• ID
  rs29839082
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:50674079 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCATGCTCT GTAGTCTACT ATATAGCCCA TAGGCAGGTC
  TCAAATTCCG GGCTATGCTC CTGCCTCAGC CTCCTGATTG TTCTATATGT TGTAAGTCAC
  R
  GCCTAAGCTT TTTTAAAATT TTTATTTATT TTTTATTTTT ATTTTTCTCT CTCTCCCTGT
  TGCCCTCTGG TGCTGGGGAT CCAACTCAGG GTCCTAAGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46347713	mCV25206012	ABI	CRAMUS_MOUSE	f	SNP	A	G	A
ss136481044	ENSMUSSNP2471492	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		A
ss322959953	CHEV_9_50570884	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29839082					SNP	A	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:50674079 () rs orientation: forward

Symbol	Name	Function Class
Cfap68	cilia and flagella associated protein 68	mRNA-UTR
Gm67659	predicted gene, 67659	559 bp upstream
Rr678731	regulatory region 678731	660 bp proximal
Rr678732	regulatory region 678732	749 bp proximal