rs29838980 SNP Detail

Summary

• ID
  rs29838980
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30064533 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACAGAAAAG TCATATAGAG
  CAGCATGTAG AACATAATAT TTCTAAACTA AACATTCAAT ATTTAGGTTT GGATAATTCA
  ACTGTCAATA CTGTAGCTCT CTATAGTCTC TTCTATAAGT GGGTGAAGGT TTATACATAT
  TTTGTCATTT TAATTCGATT AAAAACTTTC ATATAACTAT TATTAAATTT CATTTATTAG
  Y
  TTGTATTTCC TCACCATAAA ATTATACTCT TAGCTAAAGA ACTGCCTCAT AGATGCTTCT
  AACCAAAATA AAGAAAAGAA AATGAAATTT ATATAAATAT GAACATACAT GCAAAGTATA
  ACCTAAGACT TAGTTAACCA ACACCAATAC ATGTTTTCAT GCCACATACA GCAAACAGAA
  TAACAAAGTG GTTTACAGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46886380	NES10819336	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29838980					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46886380	NES10819336	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30064533 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13032	CpG island 13032			1872 bp proximal
Mecom	MDS1 and EVI1 complex locus			Intron
				Noncoding-Transcript-Variant
Rr574700	regulatory region 574700			244 bp proximal
Rr574701	regulatory region 574701			1505 bp proximal
Tssr28678	transcription start site region 28678			1814 bp upstream