rs29838045 SNP Detail

Summary

• ID
  rs29838045
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30063879 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTATTTATA AAGATGCTAA
  GACAACATGA ATAATCACCC AAAGAAAACA TCCGTGAAAA CAAGCAGAGC TGAATATGTC
  TTCGTTCTGC ATCTTGGACT TGTGTGTTAC CTTCTGCCGT TATCAACAAA CAGGCCACAT
  GGGTCTGCTG CAGCTCCCTG TTATTTTTAC TCTTCAGGCT TCCCTGATAC GTTAGTGCTC
  K
  CAAAGAAAGG CAAGAAAATC TTTACAACAT ACCTGATCAT TTATCTGGCA TGCAACAAGG
  TTGTGCTGAT CATAGCAGCC AGCGAATCTG ATGTACTTGA GCCAGCTTCC TACATCTGGT
  TGACTGGCAT CTATGCAGAA CTTCACATTG CAAAACTCAT CTAAGATCTG GGAGGAAGAA
  GAAGAGAACA ATAAATTGCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46886365	NES10819327	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	G	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs29838045					SNP	T	T	T	T	T	G	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46886365	NES10819327	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30063879 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mecom	MDS1 and EVI1 complex locus			Intron
				Noncoding-Transcript-Variant
Rr574700	regulatory region 574700			898 bp proximal