rs29837309 SNP Detail

Summary

• ID
  rs29837309
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:32880680 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGTCTATT CTCAGCAGTT
  CTTAGAAACA GGGTTGTTGG TCTGCTGAGG GGATCAGAAC ATTGATTGGC CAGGAAGAAA
  GAGAACAGAA GAACAAGATG TGAGGATGAG GGGGGACAAG GGGGACAAGA AGCTCATGTG
  CATGGCCACT TGGGGTTCAC TGAATTGTAT AGCAGGTCTC CAGCCTGAGG CTTTATGGTG
  R
  GCTTCAGTGA ACGTGAATTT TCTCTCCGTT TGGACCCTGG ACATAGCAGA TGAGGGCACA
  AAGACCGAGG GGATTGACAA CCCTTCAGGT AGTTCAGTGG CATCTTCCAT GCAGCTCAGT
  CCATGGGGTC TTGGAAACTG GCTGAATAGA ACAAGTTCAG CCAGGAGTGG CCACTTTTGA
  GAAGGGCACA CCTTTCTTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46888129	NES10812122	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29837309					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46888129	NES10812122	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32880680 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr575029	regulatory region 575029			1288 bp distal
Rr575030	regulatory region 575030			225 bp proximal
Usp13	ubiquitin specific peptidase 13 (isopeptidase T-3)			Intron
				Noncoding-Transcript-Variant