rs29836360 SNP Detail

Summary

• ID
  rs29836360
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30063435 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTAAGTGTA AAATTAGTTT
  TATGATGATA TTACGGTTTG TATTTCATAG TTACTTTTCT TAAAGTCTCA CTGCTTGATC
  ATCCATAAAG TCACAAAATT CTCCAATCGT GAAAACTTTA AACTTATACA TTATATAAAG
  GAAAAGTATT TTGACTATTC AAAGAGTAAA AAAAAAAATC TCATTTTATT ATGCTGACTT
  R
  GAAAATTAAC TATAATTATG TATTCTATAA TGTATAATTG ATAAGTCGAC ACCAATAACA
  GACATATACA TCTACCATTT CAAATAAAAC TAAAACTATT CATATATCAT TTACAAATTC
  TGTACAAATT CTCAAACTGT TTTAGCTCTA TACATCCTAT GAATGTATCC ATTTGGATGA
  TAAAGAAAAA AAATGTAACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss46886350	NES10819322	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs29836360					SNP	A	A	A	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46886350	NES10819322	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30063435 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mecom	MDS1 and EVI1 complex locus			Intron
				Noncoding-Transcript-Variant
Rr574700	regulatory region 574700			1342 bp proximal