rs29835973 SNP Detail

Summary

• ID
  rs29835973
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30070413 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCTTCCCT GTAAGCTTGC
  TTCCCGTTAG TTAGGAGCCT TCTAAAACAA TAAATAAATA CAAGGAGCCA AATCCACCAA
  CTCCCTTTAC TCCTTGGATT TCTAGAGAAA TCTGTTTACA GTAGTTACCA GCTACAAATT
  AAGCCACTGC AAAGCTGCTT TCTGCTCCAC AGTGATCAGG AATACGCCTG TTCTGCAGAG
  Y
  TTAGCACCGC CCTTGCAATA GACTATTACA AATAATGGTT TTACCTTAAT CTCGAACCAG
  CTTTAGTTTG CAAGCCCGGA TCAGGAAAGT TGATCTAACT ACCAGGGTAG TGGAAGGCAG
  GAGGCGGCTT TAAGCAATGT ATGGCTTTGA GAATGCATGC AACAGAGTAG CGATCAGATT
  TTTACAGAGT AGCGATCAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46886443	NES10819078	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	T	C	T	T	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29835973					SNP	T	C	T	T	T	C	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46886443	NES10819078	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30070413 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mecom	MDS1 and EVI1 complex locus			Intron
				Noncoding-Transcript-Variant
Rr574704	regulatory region 574704			544 bp distal
Rr574705	regulatory region 574705			815 bp distal
Rr574706	regulatory region 574706			367 bp proximal
Rr574707	regulatory region 574707			1907 bp proximal
Tssr32883	transcription start site region 32883			1874 bp upstream