rs29835967 SNP Detail

Summary

• ID
  rs29835967
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30070214 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACTTCACA TGATGACAGC
  CATCCTGCTT TGTCTTAACA TAACTTGAAA TTTAGAGAAA AAGTCCCACA ATCTCACAAT
  AAGTGATAGA GCGCTCCTCC CTGCCTCTCT CCAATAGTAA CCCATTAGGA GATCTACCCC
  ATCCGAAGAA AAACAGGCTC AAACAAGGGT AGAGGGCAGA GTTTTGCAAG GAGTGTGCTT
  W
  GCTTCCCTGT AAGCTTGCTT CCCGTTAGTT AGGAGCCTTC TAAAACAATA AATAAATACA
  AGGAGCCAAA TCCACCAACT CCCTTTACTC CTTGGATTTC TAGAGAAATC TGTTTACAGT
  AGTTACCAGC TACAAATTAA GCCACTGCAA AGCTGCTTTC TGCTCCACAG TGATCAGGAA
  TACGCCTGTT CTGCAGAGTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46886437	NES10819074	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29835967					SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46886437	NES10819074	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30070214 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mecom	MDS1 and EVI1 complex locus			Intron
				Noncoding-Transcript-Variant
Rr574704	regulatory region 574704			345 bp distal
Rr574705	regulatory region 574705			616 bp distal
Rr574706	regulatory region 574706			566 bp proximal
Tssr32883	transcription start site region 32883			1675 bp upstream