rs29835661 SNP Detail

Summary

• ID
  rs29835661
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30069789 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCGATGTA TCCCGAAATA
  AAGTACAGTG CCTGCAGCCT CAACGACCTA GGTGAACCCA CCAGGATCTG ACAGCCTGGT
  TGCAGCCTCC AGGTCTCACA GACACAGACC CTGGGAAACT GCCTGAGTGG AGGATGCTCC
  TACCTCTGAA TTTCCTTAAT TTCCTCCCTG AGACCTTGAG AGATGTGTCT AAAGACAGCG
  M
  GGATCCATTC TAACATTACC GCTATCCGTT TAATATGTGT CTCTTATTAA ATAGTATCAA
  TATTGGTGCT GTGATTCTCA CTCTTGTACA ACAGATAAAC TGCAGGAAAG ATTACACGGC
  ATTATCACAA GCATCTATCT GGGCGAAGAA AGTCTAACAG CAGCTTCCTG GTCCCCACTC
  CCCTCACCTC CTCCCAACAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46886431	NES10819071	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29835661					SNP	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46886431	NES10819071	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30069789 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D3Mit46.1	DNA segment, Chr 3, Massachusetts Institute of Technology 46.1			1915 bp distal
Mecom	MDS1 and EVI1 complex locus			Intron
				Noncoding-Transcript-Variant
Rr574703	regulatory region 574703			1899 bp distal
Rr574704	regulatory region 574704			within coordinates
Rr574705	regulatory region 574705			191 bp distal
Rr574706	regulatory region 574706			991 bp proximal
Tssr32883	transcription start site region 32883			1250 bp upstream