rs29835655 SNP Detail

Summary

• ID
  rs29835655
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30069049 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTGGTGG CCTGTTATCT
  ATGACACTGA ACTGTTATTT CAGATAATGG CCATTGTTTG GCGGGGGGGG GGGGGGGGGG
  GAGGGAGATC TCACAGCAGT AGTAGGTAAG ACAGGGGAAA AATCCTTTGT AAATAACCTA
  AGCATTGAGA TATTCCCATA GAGCCCTGCC TGAGAATCAT GAGGAGTCTG GGCTTCCCTG
  M
  ATTGATCTTA GGCCCTTCCT CAACTTGCCC ATTGTTGAAG TGCTCTTTTT CTTTTACTTT
  TTTTTTTTTT TTTAATTTAG CCATAAATTG GAATAGCTGG AGCTATGAGC TGTTCTATTT
  TCTTCCTGTC AGGATGAGAG ATTTGTTTTA TGATGCATTG TGTATTAAAT ACAAGTAATC
  TGGGGAACTG AGTGCTTCAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46886425	NES10819068	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29835655					SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46886425	NES10819068	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30069049 () rs orientation: forward

Symbol	Name	Function Class
D3Mit46	DNA segment, Chr 3, Massachusetts Institute of Technology 46	1296 bp distal
D3Mit46.1	DNA segment, Chr 3, Massachusetts Institute of Technology 46.1	1175 bp distal
D3Mit46.3	DNA segment, Chr 3, Massachusetts Institute of Technology 46.3	1425 bp distal
Mecom	MDS1 and EVI1 complex locus	Intron
Rr574702	regulatory region 574702	1755 bp distal
Rr574703	regulatory region 574703	1159 bp distal
Rr574704	regulatory region 574704	263 bp proximal
Rr574705	regulatory region 574705	528 bp proximal
Rr574706	regulatory region 574706	1731 bp proximal
Tssr32873	transcription start site region 32873	1989 bp upstream
Tssr32874	transcription start site region 32874	1880 bp upstream
Tssr32875	transcription start site region 32875	1864 bp upstream
Tssr32876	transcription start site region 32876	1751 bp upstream
Tssr32877	transcription start site region 32877	1726 bp upstream
Tssr32878	transcription start site region 32878	1654 bp upstream
Tssr32879	transcription start site region 32879	1640 bp upstream
Tssr32880	transcription start site region 32880	1560 bp upstream
Tssr32881	transcription start site region 32881	1531 bp upstream
Tssr32882	transcription start site region 32882	1501 bp upstream
Tssr32883	transcription start site region 32883	510 bp upstream