rs29835332 SNP Detail

Summary

• ID
  rs29835332
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30037090 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGGAATAT ATCCTTTGAG
  ACTAAATGTA CTATGAGAAA ATGTCTTGAT GGGTAGTTAA ACAAGTGTAA ATGCAGGAGC
  TGTACTGTTT TAGAAATAAA CTGTTGTTCT TGCCTCTTCT TTCATGTAGC AGGATGGCTC
  TAAGAAAATC CACAGTGTGT ACGTTGGAAT AACAGAAGAT GTTCTTGACT TGTCTGGCTG
  Y
  GGCTTTTGTT GCAGGACAAG TAGAGTCTAT GTCTGGTCTC AAAATCATTG AATCTGGGAT
  GTTTCTTTAG TCAGAGCTTA GTTTACCACC CTTGAAGGCT TGATCTAAGA CATCAATAAC
  CAGGCTCCAG GTCAATGGTT CAATTGATGT TGAAGTCTAT ACTCCAGTGT AATTTTCTCA
  GTAACAAGGA ATTAGTCTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46886143	NES10820583	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29835332					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46886143	NES10820583	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30037090 () rs orientation: forward

Symbol	Name	Function Class
Mecom	MDS1 and EVI1 complex locus	Intron
Rr574695	regulatory region 574695	1127 bp distal
Rr574696	regulatory region 574696	1575 bp proximal