rs29832994 SNP Detail

Summary

• ID
  rs29832994
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:163934670 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GACCTCAAAC TCAGAGGCCC TGCTTCTGCC TCCCGGGTGC AGAGTGTGTG CCTCATCACT
  CTGGGTTCCT TCCCTCCCTT TTAGGCACAG CCTCATCCTG TAGCCAAGGC TGGCCTGGAA
  TTCCCTGTGT AGCTTGGTCT TGAAGCCTCC GTCTGTCAGG GCTGCTTAGA GTACAAGAGT
  GAACTAAGGA CCGGCTGGGC AGGCTTAGAT TCATATTCTA TCCCCATCTC AGATTCATGT
  TTATTCATTC ATTCTGTCTG TCTGTCTGTC TGTCTGTCTG TCTGTCTCTC TCTCTCTCTC
  W
  CTCACATACA TCACACACAC ACACACACAC CCCTCTCAAA TTTGTATTTT AAAGTTTTAT
  TTTTGTGTGT TGGGTGCAGT GCCTTTGGAA AGCCAGAAGA GGGTGTTGGA TCTTTTGGAG
  CTGGAGTTAT AGGTGGTTGG GAGCCACATG GTTGTTGGGA GCCAAATTCA GGTCCTCCAG
  AAGACTAGGG AGTGTTCCTA ACCACTGAGC TGGCCGGCCT GCTTGTCCTT TAGTTTCTAA
  AGTTTTTTTT TTTTTTAAGG AAAATCAATA TCTGTCTCCA TCTCTCTCTG GATTTTTATC
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
ss45368476	mCV23179509	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J
rs29832994					SNP	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:163934670 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
6330575P09Rik	RIKEN cDNA 6330575P09 gene			389 bp downstream
Rr569556	regulatory region 569556			88 bp proximal
Rr569557	regulatory region 569557			1584 bp proximal
Stk4	serine/threonine kinase 4			Intron
				Noncoding-Transcript-Variant