rs29832978 SNP Detail

Summary

• ID
  rs29832978
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108815979 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGACAGAGAT GCTATCATTC CTATTTGTTG TACTCTCCTC
  CACACCTGAC AGTAAGTGGT ACATAGTAGG ACTGCAGATT TTTGTTTAAG TGAATATTTT
  Y
  ACTTAATAAA TATTTTCACA AAATTAATAA CCTAATTTTG TCCAAAATCT ATTCTAAGGG
  TATGCCCTTG AATAGTACAG TTCTCAAACA AACTGGAGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45868763	mCV24063863	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	C	T
ss133510249	ENSMUSSNP68334	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29832978					SNP	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108815979 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Edem1	ER degradation enhancer, mannosidase alpha-like 1			Intron
				Noncoding-Transcript-Variant
Rr368141	regulatory region 368141			563 bp upstream
Rr636221	regulatory region 636221			635 bp distal
Rr636222	regulatory region 636222			301 bp proximal
Tssr58120	transcription start site region 58120			195 bp upstream