rs29832162 SNP Detail

Summary

• ID
  rs29832162
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:93158533 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGAT TCTTGCGTCA GGGAGAGGAC
  Y
  TGGGTGTTTG AGCCCCTTTA GCACC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45368970	mCV23015550	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	C	T
ss146941700	ENSMUSSNP2609216	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		T
ss320395385	CHEV_2_93168345	CHEVERUD	SCREENING_POP	f	SNP						C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29832162					SNP	C	C	C	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:93158533 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm39881	predicted gene, 39881			1663 bp downstream
Rr561153	regulatory region 561153			within coordinates
Rr561154	regulatory region 561154			859 bp proximal
Tspan18	tetraspanin 18			Intron
				Noncoding-Transcript-Variant