rs29830308 SNP Detail

Summary

• ID
  rs29830308
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:52197388 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAGCAGCG AAGACCAGAG
  AGCAGCCTGC CCCGCCGCCA GTCGGCCAAG GGCAAGGGAG GCTGCTGGCC TAGTCATTTC
  ACCAGGCCTC TGAGCTCCTG GAGGCCTGCA CCTACCTAGG GCCTCTGTGA TCCGTGGAGG
  GAAGCGGCTG CTGCCAACCA GTGACTTCCA TTGTTAGAAA ACTGGAGCAT TCTATTTGTG
  Y
  CCACTGCTCA GCAGTAACAT AAATATAGAT TTCTCAGGAT TAGGATAGGT ATCTCTTGGT
  GCTCTCTCCA AGAAGCTATA AAACCCTTCC TACAATCAGA TGCTGTGAAG TAGCATGAAT
  TACATACGGA AATATAACGA GGATATATGC CTGTAGTACC TACGTGTGTG CAGGAAGATT
  TTTTTTTAAG GGAGTAAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45868132	mCV22669439	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss133191086	ENSMUSSNP7182987	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29830308					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:52197388 () rs orientation: forward

Symbol	Name	Function Class
Hoxa7	homeobox A7	Intron
Rr630374	regulatory region 630374	1207 bp distal
Rr630375	regulatory region 630375	1396 bp proximal
Rr630376	regulatory region 630376	1760 bp proximal
Tssr61004	transcription start site region 61004	1692 bp upstream
Tssr61005	transcription start site region 61005	1165 bp downstream