rs29830168 SNP Detail

Summary

• ID
  rs29830168
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108234868 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TTATTTCTAT AATTTTAGGC TGACTGAGTT CCACTAGCTT TTTCTGTCTG TTGGATCAAA
  CATTGTTGAA AGTTGTTTAA GATTTTGTAC TATTAATTTT GGGGGAATAT GGAACTGCTC
  AACATCCTAA TTGCAGTAGT GATGGCATGG ATTTATGTGT GTGCTCAGGT TCACAAAACT
  ATGGACCAAG CAAGACAGTG AATGGCCAAC ACATAACATT TGTAAAAAGT TAAATTTCAA
  CAGTGGATTA TGTCAGTTTG CCCTACAGTT TGTTTTTTTT TTTTTTTTTT TGGTTTTTTT
  Y
  TTTTAATGTA TAGGGAGGTT ATACTAATGC CTGATAAGAC TGAAACTGTT TGTCATTGGG
  AAGGGCGTTT TTTGTTGTTG TTGTTGTTGT TGTTAATGCT TTATATACTA AAGCTTATTT
  TGGCTTATGC TAAATAAAAC ATTGGCATCA ACCCTTTTTG TATTTTTGTG GGTAAAACTT
  AAATGGTCTG CCAGATTTTA GAAATATGTC TCATAAGCTA TATCTGAGCA AATATTTAGA
  CGCCATCCCA TCTTTGCCTG CTCAGTAAAA TCTTTAGTTC ATTTCCATTT GTTGAGGACA
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45867239	mCV23137459	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	T	C
ss133498422	ENSMUSSNP6966168	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29830168					SNP	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108234868 () rs orientation: forward

Symbol	Name	Function Class
Itpr1	inositol 1,4,5-trisphosphate receptor 1	Intron
Rr636067	regulatory region 636067	1841 bp proximal
Tssr58057	transcription start site region 58057	3 bp upstream