rs29828816 SNP Detail

Summary

• ID
  rs29828816
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:118453639 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAATA CAGCGAATAT GTAAACACTA
  Y
  ACAATATATA TGGAAAACAT ACAAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45867917	mCV24803193	ABI	CRAMUS_MOUSE	f	SNP	T	C			C	T
ss48065590	NES11724221	PERLEGEN	MM_PANEL2	f	SNP		C	C	C		T	T		T	C		C
ss133583007	ENSMUSSNP3977318	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C				T
ss321924596	CHEV_6_118426696	CHEVERUD	SCREENING_POP	f	SNP								T			T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs29828816					SNP	T	C	C	C	C	T	T	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48065590	NES11724221	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:118453639 () rs orientation: forward

Symbol	Name	Function Class
Rr637483	regulatory region 637483	1211 bp proximal
Rr637484	regulatory region 637484	1762 bp proximal
Zfp9	zinc finger protein 9	Intron