rs29828789 SNP Detail

Summary

• ID
  rs29828789
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:99566943 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTAGC CACCATCTTC TGGGGTCTTG
  R
  TGGTCTTCTC AATGGTCTCA TAGGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39123148	mCV23729247	ABI	CRAMUS_MOUSE	f	SNP		A	G					A		G
ss52684840	NES15534666	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G		G	G	G	G		G	G	A	G		G
ss145068573	ENSMUSSNP2687421	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G							G
ss324503046	CHEV_13_100200390	CHEVERUD	SCREENING_POP	f	SNP													G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29828789					SNP	A	A	G	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52684840	NES15534666	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:99566943 () rs orientation: forward

Symbol	Name	Function Class
Map1b	microtubule-associated protein 1B	Coding-NonSynonymous
Tssr4149	transcription start site region 4149	800 bp downstream
Tssr123696	transcription start site region 123696	534 bp upstream
Tssr123697	transcription start site region 123697	343 bp upstream
Tssr123698	transcription start site region 123698	193 bp upstream
Tssr123699	transcription start site region 123699	109 bp upstream
Tssr123700	transcription start site region 123700	62 bp upstream
Tssr123701	transcription start site region 123701	37 bp upstream
Tssr123702	transcription start site region 123702	18 bp upstream
Tssr123703	transcription start site region 123703	23 bp downstream
Tssr123704	transcription start site region 123704	74 bp downstream
Tssr123705	transcription start site region 123705	382 bp downstream
Tssr123706	transcription start site region 123706	600 bp downstream
Tssr123707	transcription start site region 123707	789 bp downstream
Tssr123708	transcription start site region 123708	997 bp downstream
Tssr123709	transcription start site region 123709	1166 bp downstream