rs29828489 SNP Detail

Summary

• ID
  rs29828489
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:108582523 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCAG GCACTCTACC CAATGAGGCA
  Y
  GTCTCCAGCC CTGTTTGCTG CTTTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	MSM/Ms	SM/J
ss45868213	mCV25345362	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss133505804	ENSMUSSNP4692997	ENSEMBL	ENSEMBL_Sanger	f	SNP	T			C
ss321893297	CHEV_6_108555556	CHEVERUD	SCREENING_POP	f	SNP			T		T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	MSM/Ms	SM/J
rs29828489					SNP	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108582523 () rs orientation: forward

Symbol	Name	Function Class
0610040F04Rik	RIKEN cDNA 0610040F04 gene	within coordinates
Gm67596	predicted gene, 67596	1534 bp upstream
Rr636144	regulatory region 636144	781 bp proximal