rs29828481 SNP Detail

Summary

• ID
  rs29828481
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:126339372 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTATAGATG AAATGACACA GTATTGCATG GTCGAGAACC
  TGTGGTTAAC CCTGCCAGTA AGAGAGACAG GGAAGATCTA TATGAGCTGA CTGATTAAAC
  W
  CCGCTCACCT CGCCCACTGC CATTGTTCTC TCAGTCTCCC TGTGCCAGTC TGCTGTCTAC
  ATTTTTATTC ATTTTTAGTA TATTTTTTTA ATTTTGTGT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss45368925	mCV22622669	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs29828481					SNP	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126339372 () rs orientation: forward

Symbol	Name	Function Class
Atp8b4	ATPase, class I, type 8B, member 4	Intron
Rr564345	regulatory region 564345	928 bp distal
Rr564346	regulatory region 564346	1419 bp proximal
Rr564347	regulatory region 564347	1991 bp proximal
Tssr19934	transcription start site region 19934	1613 bp upstream
Tssr26038	transcription start site region 26038	709 bp downstream