rs29828225 SNP Detail

Summary

• ID
  rs29828225
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:115995320 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGCA AGCAATTTGC CAACTGAGCT
  R
  TTTTCCCAGC CCTTAAAGCA TGATC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45866816	mCV22285919	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	A	G
ss133574548	ENSMUSSNP441599	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A		G
ss321917122	CHEV_6_115968377	CHEVERUD	SCREENING_POP	f	SNP						G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29828225					SNP	G	G	A	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115995320 () rs orientation: forward

Symbol	Name	Function Class
Rr637138	regulatory region 637138	555 bp distal
Rr637139	regulatory region 637139	277 bp distal
Tmcc1	transmembrane and coiled coil domains 1	252 bp downstream