rs29822589 SNP Detail

Summary

• ID
  rs29822589
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129023962 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACTCCAGTT CCAGGGGAAC CTGACACCCT CTTCTGGCCT
  CCTCCGACAC AGTATACATA TGCTACACAG ACATACATGC AGGCAAACCC ACACATTTTT
  W
  AAAAAAGATC TCAAGGGTGG GAGAACGAGG GGGAGGGAAT TTAAACTTTT TGAGTCAGGG
  TCCAGGATGG TCTTGAACTA TGAAACCTAG GACAACCTT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45367364	mCV23185337	ABI	CRAMUS_MOUSE	f	SNP	T	T	A
ss147582188	ENSMUSSNP3952030	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29822589					SNP	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129023962 () rs orientation: forward

Symbol	Name	Function Class
AI847159	expressed sequence AI847159	1369 bp upstream
Gm14029	predicted gene 14029	within coordinates
Gm39932	predicted gene, 39932	561 bp upstream
Rr367309	regulatory region 367309	1748 bp downstream
Rr564859	regulatory region 564859	1300 bp distal
Rr564860	regulatory region 564860	317 bp distal
Rr564861	regulatory region 564861	59 bp distal
Rr564862	regulatory region 564862	641 bp proximal
Rr564863	regulatory region 564863	1318 bp proximal
Rr564864	regulatory region 564864	1761 bp proximal
Tssr26188	transcription start site region 26188	1383 bp upstream
Tssr26189	transcription start site region 26189	1371 bp upstream
Tssr26190	transcription start site region 26190	1735 bp downstream