rs29819523 SNP Detail

Summary

• ID
  rs29819523
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:92815293 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCCG TCCATCATCT CATGTAGGAC
  R
  AAGCATGGTG TGTGTTTATA AACAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45367628	mCV23155215	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G	G
ss146938040	ENSMUSSNP394555	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A		G
ss320394727	CHEV_2_92825105	CHEVERUD	SCREENING_POP	f	SNP						A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29819523					SNP	G	G	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:92815293 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Prdm11	PR domain containing 11			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr561038	regulatory region 561038			1185 bp distal
Rr561039	regulatory region 561039			1791 bp distal
Rr561040	regulatory region 561040			768 bp proximal