rs29816798 SNP Detail

Summary

• ID
  rs29816798
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:102419435 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCGTGCATG GGACTTAATA
  GTAGCTTCTG ATATTGCTAG GAGACACAAT TTCCAAACAA ACTCCCTGAT CTTCTTGCAT
  TTATGATCTT TCTGCCCCCT CCTCTATAAT GTTCCTGAGT TTTAGGTACA GAAATATTCT
  GTAAATTTAT CTATTGGAAC TACATTCTGG TTAGCTGTGA TTTTTTGCAG TGGTCTCTGT
  Y
  TGTTGCAAAG TTAGGAGAAC TGATTTCAGT TTGTGTCAAG CTGACAAAAA CTAACCCAGA
  AGGCCAGAAA AGTGACACCT GACAGGTAAT TCTAGCAATA TATCAAAGGC TCATTGAAGT
  GGAGCCAGTG CCGTGTGCAA AGGTCATAGC TAGGAATGCT ACTTCAGTGG CTAGGTGAGA
  GGAAAGAGCA AGTGATGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45366990	mCV23733085	ABI	CRAMUS_MOUSE	f	SNP		T	C
ss147116547	ENSMUSSNP5674772	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		C
ss320439078	CHEV_2_102429247	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29816798					SNP	C	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102419435 () rs orientation: forward

Symbol	Name	Function Class
Pamr1	peptidase domain containing associated with muscle regeneration 1	Intron
Rr373606	regulatory region 373606	660 bp downstream
Rr561706	regulatory region 561706	869 bp proximal
Rr561707	regulatory region 561707	1101 bp proximal