rs29816704 SNP Detail

Summary

• ID
  rs29816704
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:120528701 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGTC CTGAGTTGTT CCTGCACTCT
  R
  CCCCCTGGAG CTCTTCCCCA TCCTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45365985	mCV22574170	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss147366579	ENSMUSSNP6101432	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
ss320479461	CHEV_2_120523956	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs29816704					SNP	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:120528701 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr563728	regulatory region 563728			100 bp distal
Stard9	StAR related lipid transfer domain containing 9			Coding-NonSynonymous
				mRNA-UTR
				Noncoding-Transcript-Variant