rs29816335 SNP Detail

Summary

• ID
  rs29816335
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153083972 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCTCAGATC AGTAGATGGA GTTTGTAGGA CAAGACCTGC
  CCGCACTGTC TCGTGGCAAT TCTTGCATTC ATTCAGCAAA GAATTTATAT GCCCCCCCCC
  Y
  TTTTTTTTAA TGTCCCAGGC GCTGTTGTCT GTGCTGGTGG TGAATGAAAC AGATAAATCT
  CATAGGATTC TTCATTTTAG GAAGACAGAC AATAAAAAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss45364774	mCV23160857	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss147988432	ENSMUSSNP4174087	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs29816335					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153083972 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12482	CpG island 12482	160 bp distal
Plagl2	pleiomorphic adenoma gene-like 2	694 bp upstream
Pofut1	protein O-fucosyltransferase 1	Intron
Rr567588	regulatory region 567588	637 bp distal
Rr567589	regulatory region 567589	464 bp distal
Rr567590	regulatory region 567590	75 bp distal
Tssr20880	transcription start site region 20880	1126 bp downstream
Tssr20881	transcription start site region 20881	1109 bp downstream
Tssr20882	transcription start site region 20882	586 bp downstream
Tssr20883	transcription start site region 20883	449 bp downstream
Tssr20884	transcription start site region 20884	434 bp downstream
Tssr26895	transcription start site region 26895	698 bp upstream
Tssr26896	transcription start site region 26896	658 bp upstream
Tssr26897	transcription start site region 26897	641 bp upstream
Tssr26898	transcription start site region 26898	552 bp upstream
Tssr26899	transcription start site region 26899	328 bp upstream