rs29816199 SNP Detail

Summary

• ID
  rs29816199
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:152659064 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGGGTACT TTGGGTCTCT
  CCCCTCCGAA TCCAACATTA CTCCCATCCC TGTTCCCCCA GGCCTCTATC AGTCTCTGCT
  TCCTTCTGCC TGACCAGTTT TACCCAGCAC AGTAAAAGCC ATGATAGCTC ACCATCTCTC
  AGTGTTTCAC ATGCACCCTT CAGATCTGGC TGGCTGGTTC TTACCCATCT AGCCTGTCCC
  W
  GCCACATTCC TTTCACCTAT TTAATCTTTC ACTGAGTTGG GTGTGGTGGT GCAAGCCCAT
  AACCCCAGAA AAGTGTCACA GGAGGACTGA GGTCAGGATC AGATGGGCTC TACAGAGACC
  CTGTTTCAAA ACAAGGTGAA ATGGCTGAGA CTACAGACTG AGGAAGAAGA CTTGCACAGC
  AGGCTTAATG CCCTGGGTTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45364964	mCV27575752	ABI	CRAMUS_MOUSE	f	SNP	T	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29816199					SNP	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152659064 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Bcl2l1	BCL2-like 1			Intron
				Noncoding-Transcript-Variant
Rr1128	regulatory region 1128			232 bp proximal
Rr367334	regulatory region 367334			677 bp downstream
Rr367335	regulatory region 367335			468 bp downstream
Rr567481	regulatory region 567481			1569 bp proximal