rs29815574 SNP Detail

Summary

• ID
  rs29815574
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:178306245 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGCAATAGT AATGGAGATA TTTATTGATA CGCCCAAACA
  GGAAGAGAGG AGAGGGCCAC CCGAGCTGCC TGTGTTCCAT GCATGGTTCC CCTTCCCTTT
  Y
  CCCAGCTGAG GTGGTCTTGT GGTGAGCTGG AGTGTACAGG ATCGAGGTTA GCTAGCTGAT
  GAAAGGGGGG TTCTAGGCTT CAGCCTTTGT GAATGTCAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45364642	mCV23363333	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss148367462	ENSMUSSNP3357983	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29815574					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:178306245 () rs orientation: forward

Symbol	Name	Function Class
Gm35695	predicted gene, 35695	within coordinates
Gm74926	predicted gene, 74926	1654 bp downstream
Rr397573	regulatory region 397573	531 bp upstream
Rr572447	regulatory region 572447	1666 bp distal
Rr572448	regulatory region 572448	431 bp proximal
Rr572449	regulatory region 572449	725 bp proximal