rs29815139 SNP Detail

Summary

• ID
  rs29815139
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30220931 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCCATGAA GGCATAACCT
  TTGTCCAAGA GCTGCCCAGC CCAGAGCCAT AATCACAGAC CGAATTGCTA CCAAAGAGAA
  TAGGAGGCAC TGAAGACTGA GTCTCTCCCC TCATAACAAG AAATCACAGA TGCCATAATG
  TAATTGGAAT TCCCACACTA AGTCCAGAGC TTTGGAGTGG TAGATGAGCC TTAATGATGG
  Y
  TGTTCTATAA ATCGGTCCTG GGGAAGTGAC TGACAACGTA ATCTCACAGC AACTGTGGCA
  GAGTGTGGCT GTGCCATCTT GCCACTTTTG AATTACTCAG GTAGATTTAA GATAGCTCAA
  CTGTTAATAT GTTCTGTGTT CCCTTAGAGA ATTACATTCA CAGTCTTAAT ATTGCCTCTG
  CACTGCACTG GGAAACAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ
ss49570805	NES12878275	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ
rs29815139					SNP	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49570805	NES12878275	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30220931 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mecom	MDS1 and EVI1 complex locus			Intron
				Noncoding-Transcript-Variant
Rr574731	regulatory region 574731			1653 bp proximal