rs29815138 SNP Detail

Summary

• ID
  rs29815138
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30221844 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTATCTAGA TCAGGTCAAA CTAGACAGAC ATGATTCTCC
  ATCTTCAGTC AAAGCATTCG TCCCTCCTTC TTAAAGTTGG CAAAGTAATC ACAAAAATTC
  R
  GGACTCTGTA AATCAAGAGA ACTGACGATT CCTATCCCAG GAAGCAAGAT GTTAGCCAAT
  CCACTCGAGG GAAAATTGGA GCAAAATATG TCTTTTTAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ
ss49570804	NES12878205	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	A	G	G	G	G
ss134729579	ENSMUSSNP2515295	ENSEMBL	ENSEMBL_Sanger	f	SNP		G			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ
rs29815138					SNP	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49570804	NES12878205	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30221844 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mecom	MDS1 and EVI1 complex locus			Intron
				Noncoding-Transcript-Variant
Rr574731	regulatory region 574731			740 bp proximal