rs29813923 SNP Detail

Summary

• ID
  rs29813923
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30202565 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAAAATGC ATATAAATAT
  TTCTTAAAGT TTATAGCTAC AATAATAGAA AATAGTTCTC ATGAAGGAAG AAAGTCAATC
  ACACTGGTAA TAATAATAAT TAATAATGGT AATAATAAAA ATGTTAAAAA GCCATGTGAC
  AAAGAGACAG TGTCCACCTC ACTGTCATCT GTCAAGGAGA AATCTAAGAA CAGGTCTCAT
  Y
  TCCAGAACTT CAGCATAGTT TTGTCGGAAT CTCTTTGTTG AAGGACAATA GCCCACTTTT
  ACGAGTAAGT AGTCACATCC CTTTGAGTGC ACTTATATGG TAGTTTCTTA AAACCATTCA
  CCTTGCCCAC AGTTCATGGA AAAGGAAGCA GAGACGCGGT TACATAGTCA CTGGCCTCAA
  AGCTGCCTCC TATCACCAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49570894	NES12879010	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29813923					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49570894	NES12879010	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30202565 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mecom	MDS1 and EVI1 complex locus			Intron
				Noncoding-Transcript-Variant
Rr574727	regulatory region 574727			350 bp proximal