rs29813240 SNP Detail

Summary

• ID
  rs29813240
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153083766 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCTTAAACG GAGAAACTGA GGCGGAGGAG GCGGAGCCAC
  TTCTCTGAGG CGCCCGGAGA CTTCTCAGGT CCAGAGGAGA ACACCAGAGA GGGGCAGGGC
  S
  TGTGTTCTTC CCTGCCCTAC TTGCCTGGGT ACAGAGGACC CATTGGTGTT CAACTTGCCA
  TTCGACAGAT GGGAGAAGTT AAGTGACTCA CTCGAGGTC                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45364619	mCV23160845	ABI	CRAMUS_MOUSE	f	SNP	C	G	C	G
ss147988422	ENSMUSSNP421259	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29813240					SNP	C	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153083766 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12482	CpG island 12482	within coordinates
Plagl2	pleiomorphic adenoma gene-like 2	488 bp upstream
Pofut1	protein O-fucosyltransferase 1	Intron
Rr567588	regulatory region 567588	431 bp distal
Rr567589	regulatory region 567589	258 bp distal
Rr567590	regulatory region 567590	110 bp proximal
Tssr20880	transcription start site region 20880	920 bp downstream
Tssr20881	transcription start site region 20881	903 bp downstream
Tssr20882	transcription start site region 20882	380 bp downstream
Tssr20883	transcription start site region 20883	243 bp downstream
Tssr20884	transcription start site region 20884	228 bp downstream
Tssr26895	transcription start site region 26895	492 bp upstream
Tssr26896	transcription start site region 26896	452 bp upstream
Tssr26897	transcription start site region 26897	435 bp upstream
Tssr26898	transcription start site region 26898	346 bp upstream
Tssr26899	transcription start site region 26899	122 bp upstream