rs29812926 SNP Detail

Summary

• ID
  rs29812926
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30205007 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACCCCAAA TCCTTTGAAA
  CAGCTGTTTC CAACCAACTT TCGCTGTGAA TGTACTTTTG TGTGTTTAAT GCATTTGGCA
  AGCATTTGAG AAAGGCCTTG CCTACTGTTT TATTTGTTTC CATTTATGAA AACATGCATT
  CGCTATGAAA ATCAGGTGCC TTTGTAAAGT TATCAAGGAT CCCATAAGAA AACTTGATCC
  Y
  GTCTGCGCCG TAGGCAGTGA TTTCAGAAAC GCTTTCAATG CAATCTGCTA AGGAAAACCC
  CCCATGCCTT TGTCTAGATG GAGACCGATC CCCAGCTCTT TGTTGGGTAG GATCAGAGGG
  AATATAGAGC ATGTTCTGAG GTTGATAACA AACCCGGGAT GGCCGGCAAA GATTTCCATC
  TGCATATCAC CTGAGCCCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49570877	NES12878902	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29812926					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49570877	NES12878902	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30205007 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mecom	MDS1 and EVI1 complex locus			Intron
				Noncoding-Transcript-Variant
Rr574727	regulatory region 574727			1906 bp distal