rs29811879 SNP Detail

Summary

• ID
  rs29811879
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30297148 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGTTTAGA AGATACCAGA
  ATCTAAGGGG GGGGGGGATT GAAAGCTTAT TACCAATAAT AACAGTGCCC ATTGCTGCAT
  AAATACACTC ATTGCAATCC AGTGGGGGGA AAGTGATGTG AAAAATAATT TTTCATTCTT
  CCAATGTAGA ATCTGGCAGT AAAAGACACA GAACAGAATC TCTACAGTCA GCAACTGTTC
  R
  AACCCAATCT TCGCTTTCTC ACTTAGGCCT TTTACTTTCT TTAAAGATTT TATTAGGAGT
  CTGGGTCGTC AAAAGTCTGT CTCCTGTGTA AACATTCTGT TGTTCAGCCT TTTCATTTGA
  TAGTGTTTTG TAAATACTTT TCTCTTTTTT CCTATTTGCT AAACTTATGT GCAATTGCTA
  CACATTCTAC CATTATAGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss49570366	NES12874385	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs29811879					SNP	G	G	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49570366	NES12874385	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30297148 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mecom	MDS1 and EVI1 complex locus			Intron
				Noncoding-Transcript-Variant
Rr574744	regulatory region 574744			1247 bp proximal