rs29810962 SNP Detail

Summary

• ID
  rs29810962
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30298453 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCACTCCAT GTTGTCCTTC
  CTGTCGGTAT CGGAAATGTT TTCCTCTCTG CTCCCCGAGT CAGTCCATTG ATAGAAAGTG
  TTCAGAGACT AAGGCAGTAT TAATGCTAAC GTTTAAAGCA CAAAGCTCGA CTTTAGCTAA
  AACCATGAAA CCATGTTAAC TTGGCTGTAC AAACTTGCGC ACAATATGCA CATCCATGTG
  Y
  ATTTGCTAGC AATAAGTGGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGGTA
  CTTAGCAGCT CCCTAATCTT AAAAATAGGC TGAGACAGAA ACATGATTTG GGATCTCAGG
  CAGACTGGTT GAGATCATAG CTGTGTAAAA CAGCTGCCAA GAGGAGCCCG ACTAGGGAAT
  TGAACAGATT AGGTAACTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss49570359	NES12874392	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs29810962					SNP	C	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49570359	NES12874392	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30298453 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mecom	MDS1 and EVI1 complex locus			Intron
				Noncoding-Transcript-Variant
Rr574744	regulatory region 574744			within coordinates
Rr574745	regulatory region 574745			1484 bp proximal