rs29810957 SNP Detail

Summary

• ID
  rs29810957
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30299465 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGATGAGG AAAATAGATG
  CTCATGGAGC TGACAAATAG GCTGTAAAGG ATTCTATGGA AATCCAGCAG CATAGATTTG
  GAAGCAGAGG TCTGTCCTAT AGAGGTCATT GTCTTAGAGA GGTCACCCAT GGGCAGTCTT
  CAAAGCACCA TGATCCCAGA AAAGGGTGAA AGGCAAACAC TCGTCATGTT TCAACTCTGG
  Y
  CCATGTGTGT GACATCTGAG TCTCTATGGC ATATTTGTGC CCTAGCCTGC TGACATGGCT
  TGGCATGTGG AATTTTCCTA ATGGTCTTTC AAGCTCCTTT GACTCTCAGT GTTTCAGTTA
  GCTTCCTTGT TCTGACCTAA TCCATTTCTT CCCTCTGGGC CTTGCTACCT GACAGTATTC
  AAAGCACTTC ATTAGTCTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49570354	NES12874397	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29810957					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49570354	NES12874397	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30299465 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mecom	MDS1 and EVI1 complex locus			Intron
				Noncoding-Transcript-Variant
Rr574744	regulatory region 574744			348 bp distal
Rr574745	regulatory region 574745			472 bp proximal
Rr574746	regulatory region 574746			1425 bp proximal