rs29810141 SNP Detail

Summary

• ID
  rs29810141
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:31265343 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTCCTGCA TGTAATGTTT
  CTGCCCAAAC TACCATAAAG TCCTGGCCTC CAAGTAAGGC CCTGGCACCT GTCCGCCTCT
  TAATGATAGA CACATAGTAT TCTGATTTAT CTTAGTGTTT TACACTCACC AATGGAATCG
  CTTGTTTCTG ACCCCTAAGC TGCTTCTTTT TTCAATGTGG ACTTCCAGAC TGCTTAGTGG
  Y
  ACAAGCCACT GTTACGGCAC GTACAACATC TGTCCTGTGA TTATCTGTGT TGGGTGCTTC
  TAGTGTACAA TCTTGGCCAA AAGCTGGTCC GTAATGTCTG TTAAATGAAT GAACCAGAAT
  TCCTGATGAA CACAGCCTGG CTCACCGTCT CTGTGTTGAC GTCACTCTAG CCAGAGGAAA
  CAGCATCCTT CTGTCAAAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49572147	NES12875492	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29810141					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49572147	NES12875492	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:31265343 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13052	CpG island 13052	1846 bp distal
Rr574898	regulatory region 574898	885 bp proximal
Slc7a14	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	Intron