rs29810032 SNP Detail

Summary

• ID
  rs29810032
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30299906 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAACAGACA GGGCCAAGAG
  TACAATAGGA ATTGAAAACA AATAGCAAAT ATATACATAA ATATATTTCT CATATTATGG
  TATAGGCCTT GCTAAGCTTC TCTTAAATGG CGATGGAAAG AAATTGCTAG AGCCTTTTGG
  CATCTATTTA CAGAATCCAA GAAAACAAAA TAGAGACACT AACGTTCTGT GGGTAAGGCC
  Y
  AGAGGGAAAG CATGACCTGG TTAATGTTTG GTATATTTTG TTGTTGGTGA GCCTAGTCAC
  CAGTCTATAC TGGAAGGCCT GGTAGGACCA GACTCCTTAC ATGCCCGTCT GTATTCCTTT
  CACAATGCAA CATTTGCCTG AACTCTCTTT TAGCACTACA AAATTTTAAG AGATTTTTGG
  CAACCTCTGA CCTACTGGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss49570349	NES12874406	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs29810032					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49570349	NES12874406	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30299906 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mecom	MDS1 and EVI1 complex locus			Intron
				Noncoding-Transcript-Variant
Rr574744	regulatory region 574744			789 bp distal
Rr574745	regulatory region 574745			31 bp proximal
Rr574746	regulatory region 574746			984 bp proximal