rs29809665 SNP Detail

Summary

• ID
  rs29809665
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30196565 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGCTAGC TTCAGTCTCA
  GCCAGAGACC CTGTTTCAAA AATAAAGGTG AGATGATTAA GGAGGTCACT CGACCTCAGC
  CTCTGGCTTC TACATGCACA TTCTCTATTC CTACAGAAAT ACATATTTAA ATGCATTTCA
  CCATGGGAAT ATGCTCAAGA CTGAAGCCAT TATCCAGGTG TTGTCAGTAG GCCAGGCTCT
  S
  AAAAGTCTCC TGACTTGCAT GTTTAATTAA GGAGCTATCT TGAGAGCAAG AAAGTTTGAT
  AATGCTCCAA GGTCATTTTC TGTGCAGGAA CATTGTTATG CCGGTAAATA TCTTAGTTTT
  CTAAAGATAC ATAAATGTCA GTTTAAAATA CACTATTTGT TCTCACCCTC TTCCTCTTTT
  TCTGTTGCAC TGCAACTGTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49570942	NES12879291	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29809665					SNP	G	G	G	G	G	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49570942	NES12879291	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30196565 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mecom	MDS1 and EVI1 complex locus			Intron
				Noncoding-Transcript-Variant
Rr574725	regulatory region 574725			1532 bp distal
Rr574726	regulatory region 574726			1548 bp proximal
Tssr32887	transcription start site region 32887			1983 bp upstream