rs29809664 SNP Detail

Summary

• ID
  rs29809664
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30196620 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTAAGGAGG TCACTCGACC
  TCAGCCTCTG GCTTCTACAT GCACATTCTC TATTCCTACA GAAATACATA TTTAAATGCA
  TTTCACCATG GGAATATGCT CAAGACTGAA GCCATTATCC AGGTGTTGTC AGTAGGCCAG
  GCTCTGAAAA GTCTCCTGAC TTGCATGTTT AATTAAGGAG CTATCTTGAG AGCAAGAAAG
  Y
  TTGATAATGC TCCAAGGTCA TTTTCTGTGC AGGAACATTG TTATGCCGGT AAATATCTTA
  GTTTTCTAAA GATACATAAA TGTCAGTTTA AAATACACTA TTTGTTCTCA CCCTCTTCCT
  CTTTTTCTGT TGCACTGCAA CTGTTTGATA ATGAGGGTAC CCACATACGC ACACATACAG
  GGGCAATCCC ACCATACTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49570941	NES12879292	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29809664					SNP	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49570941	NES12879292	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30196620 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mecom	MDS1 and EVI1 complex locus			Intron
				Noncoding-Transcript-Variant
Rr574725	regulatory region 574725			1587 bp distal
Rr574726	regulatory region 574726			1493 bp proximal