rs29809231 SNP Detail

Summary

• ID
  rs29809231
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:31266782 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTGACTAG TGGATAACCT
  GGGGTAAAAC GAGGCCATGG TGTGGACACT GAGGTCCAGC ATCCCTTGTC GGCAGCATCA
  GCATCTTTAT CTCTGCTGAC CCTGGCCATG TGCTCAGCTG TTTGCGCAGA AGACAAACCT
  AGCCAGCTTG CCTTGCTCTG GCCCTTGAGA ACTCGTGCTC CATCTTGATT CTGAAGCTTG
  Y
  CTCTTTAAGT TTGGACTTCT CCCCTCTTGT CTCAAATGAC TTTCCTTCCA GCCCCCCACC
  AGTCAGTGGA ATCAACTTTG CAGGAGCCAA AGAAAGCAGA GATTTATGGT CCTAATTGGT
  AATAAAGCCT GGAGTTAATC ATTTGCAGAT GTAGATATTT GGGCTCAAAT AGCAGCCTGG
  TCTTTTTGGG TGGGGGTTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49572137	NES12875333	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29809231					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49572137	NES12875333	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:31266782 () rs orientation: forward

Symbol	Name	Function Class
Rr574898	regulatory region 574898	within coordinates
Rr574899	regulatory region 574899	1221 bp proximal
Slc7a14	solute carrier family 7 (cationic amino acid transporter, y+ system), member 14	Intron