rs29807891 SNP Detail

Summary

• ID
  rs29807891
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30197583 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTCAGCTC AGAGAAACAA
  ACAAAAAGAG AGTGGAAGAA AGAACAGGCT TTTATAGGGT AGAAGAACTC CTAACCTTGT
  ATTTGGTTTT GAAATAGTCA TCTTAACACA GAAATTATAC AGGACTACAA ATTTGTTCAT
  AAATCCTCTA TATATGACAA ACCAGCCTGA AGTTCCACAT GCCATACCCA AGACTGTGTT
  Y
  CCTCCTCTCT GCAGACACAT TCAGCATGAC TGGAAGTTGT GTGAAATGAC CTGATGTTTC
  TAAAGTGCTT GGGAAGTGTA TGGGACAAAC TGTGAGCAAC TGAAGTATTT GTTCTCAGCA
  TGAAGATCAA TATATTTAGT GAAAGACACA AACTTCAGAA AGATCCACAC ATGCTTATCT
  ATGCTACAGA GAGAAAGAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49570933	NES12879221	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29807891					SNP	C	C	C	C	C	C	T	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49570933	NES12879221	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30197583 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mecom	MDS1 and EVI1 complex locus			Intron
				Noncoding-Transcript-Variant
Rr574726	regulatory region 574726			530 bp proximal