rs29803978 SNP Detail

Summary

• ID
  rs29803978
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30515423 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAGCCAGA GGGAGAGGGA
  GAAGAGGAGG GGAGGGTCTC TCTTAGGCAA GAGTGGAGCA CAATGGCATG CTGAGAAGAG
  GCGGCTTTTT GCTGCATCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC
  TGACTGTATT ACTTAGCTCT TGCCAAAAAT AAAATTAAAA TAAAATATTT AGAGGAGTTA
  K
  ATTAGCTAAT GTTTCAGAAA GAGAGGAACT GCTCTGTACA ACCAAGCAAC TACTTAGACA
  GATGAAGTCG ATTCGTTAAG CTCAGGGACA CAGATTCTTG TATCCATTTG AGACACCGAA
  TCTACTACCA TGTGCGTGCG TGAGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG
  TGTTCCTTTG GTGGTACTAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49568988	NES12859460	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29803978					SNP	G	G	G	G	G	G	G	G	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49568988	NES12859460	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30515423 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mecom	MDS1 and EVI1 complex locus			Intron
				Noncoding-Transcript-Variant
Rr574769	regulatory region 574769			within coordinates
Rr574770	regulatory region 574770			736 bp proximal
Rr574771	regulatory region 574771			1475 bp proximal