rs29800785 SNP Detail

Summary

• ID
  rs29800785
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:27332491 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCAGCAAT TTTGCACAGG
  AAGCTTTGGG AGATGTTGTT TACCGTAGTC TGCCCGAAGT TAGGACAAAA TTGAAAAAGC
  AAGAGGAGTT TGGCGCTTTG GAGAGCGTGA AGGCTGCCAG TGAACTCTAC TCTCCTCTGT
  CAGCAGAGGT AACTGAAGTC AATGAAGCAC TTGCTGCAAA CCCAGGGCTC GTCACCAAAT
  Y
  CTGTTAAGAT GGTTGGCTGA TGAAGATGAC ACTGAGTGAC CCTTCAGAGC TGGGTGAATG
  ATGAGTGAAG AAGCATATGA GAAATACGTG AAGTCCACTG AGGAGTGACC ATGGATGACA
  CCCCTCTACT TCCAGATAAA ACTGAAGTGA CCTGCTCCAG CATGCTTGTC TTAAACCAGC
  AGAGAATAGA GGACTTGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49568751	NES12892476	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29800785					SNP	C	C	C	C	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49568751	NES12892476	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27332491 () rs orientation: forward

Symbol	Name	Function Class
Gm37191	predicted gene, 37191	within coordinates
Gm42192	predicted gene, 42192	within coordinates
Rr574384	regulatory region 574384	1083 bp proximal
Rr574385	regulatory region 574385	1964 bp proximal