rs29800784 SNP Detail

Summary

• ID
  rs29800784
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:27334035 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCAGTAGCT GGTTCTCACT GGCCAAGGTG CCATGGTCAG
  TAGCTGGTTC TCACTGGCCA AGGTGCCACG GTCAGTAGCT GGTTCTCACT GGTTAAGGTG
  Y
  TTTTAGAGCT TAGGAGACCA TGGGTCATGG ATTTTTCCTT AAAGCTTGCT TGGTTTGTTA
  CAGCATACTC TGACTTAAAT TATTCCTTTC AAAAAGTTAT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ
ss49568750	NES12892366	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ
rs29800784					SNP	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49568750	NES12892366	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27334035 () rs orientation: forward

Symbol	Name	Function Class
Gm37191	predicted gene, 37191	1439 bp downstream
Gm42192	predicted gene, 42192	within coordinates
Rr574384	regulatory region 574384	within coordinates
Rr574385	regulatory region 574385	420 bp proximal