rs29800658 SNP Detail

Summary

• ID
  rs29800658
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:29866574 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGACTTTAC TCATCTTAAA
  AGAAAGCCAG TGGTGTTATA AACCTAAGTC CATGCTAGAA AACCAGGACC CCAAGACCCT
  TTGAGAGGCC AGGATGCGCT CACAATAAGT TACATCTGTC TGTAACGTAA GGCACACAAA
  GAGAGACTCA GAGAGTGTGC CTTTCTTAAA AGATGTGTCA AAGCAGGAAT CTAAGTTGGT
  Y
  CTGGAAGACC GTATAGATAG GTGGCGGGGC ATGGGACAGC AAAAACTGCA GGGGCCATTG
  ATCAGCCTCT CTGAGCCATC TCCCTCCTGG TCTGGTTCAG TTGCTTTCTC CTCAACTAAC
  TACTCTTTGC CTCCTGAGGT AGGCTTTAAG TTCCCAGTGG ATGTTTTTCT TCCCTCCCCT
  GTGAAATCAC ATGAATCTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46883779	NES10829728	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29800658					SNP	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46883779	NES10829728	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:29866574 () rs orientation: forward

Symbol	Name	Function Class
Gm33206	predicted gene, 33206	within coordinates
Gm65557	predicted gene, 65557	210 bp upstream
Rr574687	regulatory region 574687	120 bp proximal
Rr574688	regulatory region 574688	221 bp proximal
Rr574689	regulatory region 574689	656 bp proximal