rs29799772 SNP Detail

Summary

• ID
  rs29799772
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:27335349 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTATTTCC TGCTTTTCTT
  TCATATAAAC AAAACAAAAC AAAACAAAAC AGGGAAATGG TGGGTCACAA GATCCCAGCC
  TCCAAGGCTT CTTAAAATAG TTATCGTCTT TTGGGCTAGT GTAGTGTAGT ATAATATCAG
  TTTGGACCAC TTCCTGTGAC ATAGGCTGCC CTTGATGACC TGCTCAATAG AGCCACATCT
  R
  GAATGCACCA GGACCAGTGC TTTGTTCTGT GAACAGGAGG CACTCATAGT CTCTAGCCTG
  CTACAAGTGC CAAACGACTT GGTTTCATGA TATGCCAGCC TGGATTTTGA GTTTCTGAGG
  CTCCTCTGAC ATTTGACCCA CAGCAGAGCA ACTTGAGCAC CAGTGTCCAA GAGAGCCATA
  AACATCTGCA TACCACATTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss49568748	NES12892294	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs29799772					SNP	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49568748	NES12892294	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27335349 () rs orientation: forward

Symbol	Name	Function Class
Gm42192	predicted gene, 42192	within coordinates
Rr574384	regulatory region 574384	1057 bp distal
Rr574385	regulatory region 574385	424 bp distal
Rr574386	regulatory region 574386	1668 bp proximal